PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00029516-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YB
Protein Properties Length: 155aa    MW: 17639.5 Da    PI: 5.09
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00029516-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1566.4e-49599397
               NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
                        +q+r+lPianv+rimk++lPa +kisk+ k+t+qec++efisfvt+easdkc++e+rkt+ngdd++wal+tlGf++y+e++  yl kyre+e+
  WALNUT_00029516-RA  5 QQERLLPIANVGRIMKQILPATTKISKEGKQTMQECATEFISFVTAEASDKCHKENRKTVNGDDICWALSTLGFDNYAEAIVRYLYKYREAER 97
                        799*****************************************************************************************9 PP

               NF-YB 96 ek 97
                        +k
  WALNUT_00029516-RA 98 QK 99
                        86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.1E-494130IPR009072Histone-fold
SuperFamilySSF471134.94E-386129IPR009072Histone-fold
PfamPF008085.4E-25973IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.8E-183755No hitNo description
PRINTSPR006154.8E-185674No hitNo description
PRINTSPR006154.8E-187593No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDDDQQERLL PIANVGRIMK QILPATTKIS KEGKQTMQEC ATEFISFVTA EASDKCHKEN  60
RKTVNGDDIC WALSTLGFDN YAEAIVRYLY KYREAERQKA NQNKGINSSQ DKQLEESNYR  120
NDQLGKQTHE DPHAPLEFRA IDEKGDHSQA EAAST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-39594392Transcription factor HapC (Eurofung)
4g92_B5e-39594392Transcription factor HapC (Eurofung)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007030959.11e-68Nuclear transcription factor Y subunit B-4
SwissprotO040273e-59NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A061F3312e-68A0A061F331_THECC; Nuclear transcription factor Y subunit B-4
STRINGVIT_14s0060g02660.t016e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.12e-60nuclear factor Y, subunit B4